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	<title>MPI-CBG Archives - RTG 3120 Biomolecular Condensates</title>
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	<title>MPI-CBG Archives - RTG 3120 Biomolecular Condensates</title>
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		<title>Anthony A. Hyman</title>
		<link>https://dresdencondensates.org/portfolio/anthony-a-hyman-group/</link>
		
		<dc:creator><![CDATA[Mohamad Almedawar]]></dc:creator>
		<pubDate>Thu, 13 Jan 2022 13:17:02 +0000</pubDate>
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					<description><![CDATA[<p>Organization of the Cytoplasm<br /></br></p>
<p>The post <a href="https://dresdencondensates.org/portfolio/anthony-a-hyman-group/" data-wpel-link="internal">Anthony A. Hyman</a> appeared first on <a href="https://dresdencondensates.org" data-wpel-link="internal">RTG 3120 Biomolecular Condensates</a>.</p>
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										<content:encoded><![CDATA[<div class="wpb-content-wrapper"><div data-parent="true" class="vc_row row-container" id="row-unique-0"><div class="row single-top-padding single-bottom-padding single-h-padding limit-width row-parent"><div class="wpb_row row-inner"><div class="wpb_column pos-top pos-center align_left column_parent col-lg-8 single-internal-gutter"><div class="uncol style-light"  ><div class="uncoltable"><div class="uncell no-block-padding" ><div class="uncont" ><div class="uncode-single-media  text-left"><div class="single-wrapper" style="max-width: 100%;"><div class="tmb tmb-light  tmb-img-ratio tmb-media-first tmb-media-last tmb-content-overlay tmb-no-bg"><div class="t-inside"><div class="t-entry-visual"><div class="t-entry-visual-tc"><div class="uncode-single-media-wrapper"><div class="dummy" style="padding-top: 56.2%;"></div><img fetchpriority="high" decoding="async" class="wp-image-396" src="https://dresdencondensates.org/wp-content/uploads/2022/01/csm_Hyman_2020_with_copyright_inserted_b_d59a0581b8-uai-600x337.jpg" width="600" height="337" alt="Portrait from Anthony A. Hyman"></div>
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				</div></div></div></div><figcaption>© Sven Döring</figcaption></div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-500" ><span>Expertise</span></h2></div><div class="clear"></div></div><div class="uncode_text_column text-lead" ><p><span lang="EN-US">The Hyman group has made significant contributions to molecular and cell biology, particularly in understanding the mechanisms of cell division and cell compartmentalization. Perhaps the two most notable achievements include utilizing RNA interference to map various cytoplasmic processes</span><sup><span lang="EN-GB">1 </span></sup>and discovering that compartments in cells can form via phase separation<sup><span lang="EN-GB">2</span></sup><span lang="EN-US">. Their expansive body of work has also illuminated fundamental interworking of protein complexes and cellular structures like the mitotic spindle, centrioles, and P granules</span><sup><span lang="EN-GB">3,4</span></sup><span lang="EN-US">. Currently, their research is aimed at exploring how phase separation of intrinsically disordered proteins may drive neurodegenerative diseases including ALS.</span></p>
</div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h3 class="h3 fontheight-185601 font-weight-300" ><span>References:</span></h3></div><div class="clear"></div></div><div class="uncode_text_column" ></p>
<ol>
<li>
<p style="font-weight: 400;">Kittler, <span lang="EN-GB">Hyman</span> et al. RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells. <em>Proc Natl Acad Sci U S A</em>. 2005;102(7):2396-2401. <a href="https://doi.org/10.1073/pnas.0409861102" target="_blank" rel="noopener external noreferrer" data-wpel-link="external">https://doi.org/10.1073/pnas.0409861102</a></p>
</li>
<li>
<p style="font-weight: 400;">Brangwynne, <span lang="EN-GB">Hyman</span> et al. Germline P granules are liquid droplets that localize by controlled dissolution/condensation. <em>Science</em>. 2009;324(5935):1729-1732. <a href="https://doi.org/10.1126/science.1172046" target="_blank" rel="noopener external noreferrer" data-wpel-link="external">https://doi.org/10.1126/science.1172046</a></p>
</li>
<li>
<p style="font-weight: 400;"><span lang="EN-GB">Hyman et al.</span><span lang="EN-GB"> Liquid-Liquid Phase Separation in Biology. <i>Annu Rev Cell Dev Biol</i>. 2014;30(1):39-58. </span><span lang="EN-US"><a href="https://doi.org/10.1146/annurev-cellbio-100913-013325" target="_blank" rel="noopener external noreferrer" data-wpel-link="external"><span lang="EN-GB">https://doi.org/</span>10.1146/annurev-cellbio-100913-013325</a></span></p>
</li>
<li>
<p style="font-weight: 400;"><span lang="EN-GB">Banani, Hyman et al. Biomolecular condensates: organizers of cellular biochemistry. <i>Nat Rev Mol Cell Biol</i>. 2017;18(5):285-298. </span><a href="https://doi.org/10.1038/nrm.2017.7" target="_blank" rel="noopener external noreferrer" data-wpel-link="external"><span lang="EN-GB">https://doi.org/</span>10.1038/nrm.2017.7</a></p>
</li>
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<p>
</div></div></div></div></div></div><div class="wpb_column pos-top pos-center align_left column_parent col-lg-4 single-internal-gutter"><div class="uncol style-light sticky-element sticky-sidebar"  ><div class="uncoltable"><div class="uncell no-block-padding" ><div class="uncont" ><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h1 class="h1 fontheight-806469 text-uppercase" ><span>Anthony A. Hyman</span></h1></div><div class="clear"></div></div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-300" ><span>Organization of the Cytoplasm</span></h2></div><div class="clear"></div></div><div class="uncode_text_column" ><p>Discipline: Cell Biology, Biochemistry</p>
<p>Affiliation: <a href="https://www.mpi-cbg.de/research/researchgroups/currentgroups/anthony-hyman/research-focus" target="_blank" rel="noreferrer noopener external" data-wpel-link="external">MPI-CBG</a> | <a href="https://www.csbdresden.de/research/research-groups/" target="_blank" rel="noreferrer noopener external" data-wpel-link="external">CSBD</a></p>
<p>Contact: hyman (at) mpi-cbg (dot) de</p>
<p>RTG Project: <a href="https://dresdencondensates.org/projects/b4/" data-wpel-link="internal">B4</a></p>
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<div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-500" ><span>Current news by this research group</span></h2></div><div class="clear"></div></div><div id="index-239848" class="isotope-system isotope-general-light grid-general-light" >
			
														<div class="isotope-wrapper grid-wrapper single-gutter" >												<div class="isotope-container grid-container isotope-layout style-masonry isotope-pagination grid-pagination" data-type="masonry" data-layout="fitRows" data-lg="1000" data-md="600" data-sm="480" data-vp-height="">			<div class="tmb atc-typography-inherit tmb-iso-w4 tmb-iso-h4 tmb-light tmb-overlay-showed tmb-content-left tmb-image-anim tmb-meta-size-large  grid-cat-199 grid-cat-5 grid-cat-56 grid-cat-112 tmb-id-2365 tmb-img-ratio tmb-only-text tmb-content-under tmb-no-bg" ><div class="t-inside no-anim" ><div class="t-entry-text">
									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-199 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/awards/">Awards</a><span class="small-spacer"></span></span><span class="t-entry-category t-entry-category-5 t-entry-tax"><a href="https://dresdencondensates.org/category/simon-alberti-group/" data-wpel-link="internal">Simon Alberti Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-56 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/anthony-hyman-group/">Anthony Hyman Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-112 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/rtg-3120/">RTG 3120</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/jahnel-alberti-and-hyman-among-clarivates-highly-cited-researchers-in-2025/" target="_self" data-wpel-link="internal">Alberti and Hyman among Clarivate&#8217;s Highly Cited Researchers in 2025</a></h3><p>&nbsp;
RTG 3120 PI's have been among the most highly cited authors in 2025, according to Clarivate. The Hyman and Alberti groups lead the way "in the top 1% by citations for their field(s) and publication year in the Web of Science Core Collection"
See the press release by TU Dresden:…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/jahnel-alberti-and-hyman-among-clarivates-highly-cited-researchers-in-2025/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-66 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/publications/">Publications</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-5 t-entry-tax"><a href="https://dresdencondensates.org/category/simon-alberti-group/" data-wpel-link="internal">Simon Alberti Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-8 t-entry-tax"><a href="https://dresdencondensates.org/category/alf-honigmann-group/" data-wpel-link="internal">Alf Honigmann Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-56 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/anthony-hyman-group/">Anthony Hyman Group</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/intra-condensate-demixing-of-tdp-43-inside-stress-granules-generates-pathological-aggregates/" target="_self" data-wpel-link="internal">Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates</a></h3><p>A new study from the labs of Honigmann, Hyman, and Alberti in Dresden, in addition to colleagues in Texas A&amp;M University, Mayo Clinic, Brown University, and Saint Louis University investigates the mechanism behind pathological outcomes of protein aggregation inside stress granules. The authors…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/intra-condensate-demixing-of-tdp-43-inside-stress-granules-generates-pathological-aggregates/" class="btn btn-default " target="_self">Read More</a></p></div></div>
							</div></div></div><div class="tmb atc-typography-inherit tmb-iso-w4 tmb-iso-h4 tmb-light tmb-overlay-showed tmb-content-left tmb-image-anim tmb-meta-size-large  grid-cat-112 tmb-id-1365 tmb-img-ratio tmb-only-text tmb-content-under tmb-no-bg" ><div class="t-inside no-anim" ><div class="t-entry-text">
									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-112 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/rtg-3120/">RTG 3120</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/new-research-training-group-for-biomolecular-condensates-in-dresden/" target="_self" data-wpel-link="internal">New Research Training Group for Biomolecular Condensates in Dresden</a></h3><p>The DFG approved a funding application to establish a new Research Training Group (RTG 3120) in Dresden to train PhD students interdisciplinary methods and approaches to study Biomolecular Condensates. Read the press releases for more:…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/new-research-training-group-for-biomolecular-condensates-in-dresden/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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</div><p>The post <a href="https://dresdencondensates.org/portfolio/anthony-a-hyman-group/" data-wpel-link="internal">Anthony A. Hyman</a> appeared first on <a href="https://dresdencondensates.org" data-wpel-link="internal">RTG 3120 Biomolecular Condensates</a>.</p>
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		<title>Stephan Grill</title>
		<link>https://dresdencondensates.org/portfolio/stephan-grill-group/</link>
		
		<dc:creator><![CDATA[Mohamad Almedawar]]></dc:creator>
		<pubDate>Thu, 13 Jan 2022 12:51:42 +0000</pubDate>
				<guid isPermaLink="false">https://dresdencondensates.org/?post_type=portfolio&#038;p=372</guid>

					<description><![CDATA[<p>Physics of Life<br /></br></p>
<p>The post <a href="https://dresdencondensates.org/portfolio/stephan-grill-group/" data-wpel-link="internal">Stephan Grill</a> appeared first on <a href="https://dresdencondensates.org" data-wpel-link="internal">RTG 3120 Biomolecular Condensates</a>.</p>
]]></description>
										<content:encoded><![CDATA[<div class="wpb-content-wrapper"><div data-parent="true" class="vc_row row-container" id="row-unique-2"><div class="row single-top-padding single-bottom-padding single-h-padding limit-width row-parent"><div class="wpb_row row-inner"><div class="wpb_column pos-top pos-center align_left column_parent col-lg-8 single-internal-gutter"><div class="uncol style-light"  ><div class="uncoltable"><div class="uncell no-block-padding" ><div class="uncont" ><div class="uncode-single-media  text-left"><div class="single-wrapper" style="max-width: 100%;"><div class="tmb tmb-light  tmb-img-ratio tmb-media-first tmb-media-last tmb-content-overlay tmb-no-bg"><div class="t-inside"><div class="t-entry-visual"><div class="t-entry-visual-tc"><div class="uncode-single-media-wrapper"><div class="dummy" style="padding-top: 56.2%;"></div><img decoding="async" class="wp-image-373" src="https://dresdencondensates.org/wp-content/uploads/2022/01/grill-1-uai-450x253.jpg" width="450" height="253" alt="Portrait from Stephan Grill"></div>
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				</div></div></div></div><figcaption>© MPI-CBG</figcaption></div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-500" ><span>Expertise</span></h2></div><div class="clear"></div></div><div class="uncode_text_column text-lead" ><p>The Grill group bridges experiment with theory in the physics of life, in particular active matter physics, morphogenesis, the actomyosin cytoskeleton, and biomolecular condensates. Key research questions addressed concern the force balance that underlies actomyosin cortical flows<sup>1</sup>, symmetry breaking in active matter systems<sup>2–4</sup>, active chiral matter and left/right symmetry breaking<sup>4</sup>. In collaboration with the Jülicher group in Dresden the Grill group has, through its long-lasting expertise in using optical tweezers in a single molecule and a mesoscale context<sup>5</sup>, investigated protein-DNA co-condensation<sup>6</sup>, discovered a dynamic instability of cortical condensates in the context of actomyosin cortex activation<sup>7</sup>, and together with the Hyman and Jülicher groups discovered a DNA-sequence-dependent prewetting transition towards droplet of general transcription factors on DNA<sup>8</sup>.</p>
</div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h3 class="h3 fontheight-185601 font-weight-300" ><span>References:</span></h3></div><div class="clear"></div></div><div class="uncode_text_column" ></p>
<ol>
<li>
<div><span lang="EN-US">Mayer, Grill et al. </span><span lang="EN-GB">Anisotropies in cortical tension reveal the physical basis of polarizing cortical flows. </span><i><span lang="DE">Nature</span></i><span lang="DE">. 2010;467(7315):617-621. </span><span lang="EN-US"><a href="https://doi.org/10.1038/nature09376" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="DE">https://doi.org/10.1038/nature09376</span></a></span></div>
</li>
<li>
<div><span lang="DE">Gross<span lang="EN-US">, Grill</span> et al. </span><span lang="EN-GB">Guiding self-organized pattern formation in cell polarity establishment. <i>Nat Phys</i>. 2019;15(3):293-300. </span></div>
<div><span lang="EN-US"><a href="https://doi.org/10.1038/s41567-018-0358-7" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="DE">https://doi.org/10.1038/s41567-018-0358-7</span></a></span></div>
</li>
<li>
<div><span lang="DE">Bois<span lang="EN-US">, Grill</span> et al. </span><span lang="EN-GB">Pattern Formation in Active Fluids. <i>Phys Rev Lett</i>. 2011;106(2):028103. <a href="https://doi.org/10.1103/PhysRevLett.106.028103" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1103/PhysRevLett.106.028103</a> </span></div>
</li>
<li>
<div><span lang="DE">Naganathan<span lang="EN-US">, Grill </span>et al. </span><span lang="EN-GB">Active torque generation by the actomyosin cell cortex drives left–right symmetry breaking. Ferrell J, ed. <i>eLife</i>. 2014;3:e04165. <a href="https://doi.org/10.7554/eLife.04165" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.7554/eLife.04165</a></span></div>
</li>
<li>
<div><span lang="EN-GB">Fitz<span lang="EN-US">, Grill</span> et al. Nucleosomal arrangement affects single-molecule transcription dynamics. <i>Proc Natl Acad Sci</i>. 2016;113(45):12733-12738. </span><span lang="EN-US"><a href="https://doi.org/10.1073/pnas.1602764113" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="EN-GB">https://doi.org/</span>10.1073/pnas.1602764113</a></span></div>
</li>
<li>
<div><span lang="EN-GB">Renger<span lang="EN-US">, Grill</span> et al. Co-condensation of proteins with single- and double-stranded DNA. <i>Proc Natl Acad Sci</i>. 2022;119(10). </span><span lang="EN-US"><a href="https://doi.org/10.1073/pnas.2107871119" target="_blank" rel="noopener external noreferrer" data-wpel-link="external"><span lang="EN-GB">https://doi.org/</span>10.1073/pnas.2107871119</a></span></div>
</li>
<li>
<div><span lang="EN-GB">Yan<span lang="EN-US">, Grill</span> et al. A condensate dynamic instability orchestrates actomyosin cortex activation. <i>Nature</i>. 2022;609(7927):597-604. </span><span lang="EN-US"><a href="https://doi.org/10.1038/s41586-022-05084-3" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="EN-GB">https://doi.org/</span>10.1038/s41586-022-05084-3</a></span></div>
</li>
<li>
<div><span lang="EN-GB">Morin<span lang="EN-US">, Grill</span> et al. Sequence-dependent surface condensation of a pioneer transcription factor on DNA. <i>Nat Phys</i>. 2022;18(3):271-276. </span><span lang="EN-US"><a href="https://doi.org/10.1038/s41567-021-01462-2" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="EN-GB">https://doi.org/</span>10.1038/s41567-021-01462-2</a></span></div>
</li>
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<p>
</div></div></div></div></div></div><div class="wpb_column pos-top pos-center align_left column_parent col-lg-4 single-internal-gutter"><div class="uncol style-light sticky-element sticky-sidebar"  ><div class="uncoltable"><div class="uncell no-block-padding" ><div class="uncont" ><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h1 class="h1 fontheight-806469 text-uppercase" ><span>Stephan Grill Group</span></h1></div><div class="clear"></div></div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-300" ><span>Physics of Life</span></h2></div><div class="clear"></div></div><div class="uncode_text_column" ><p>Discipline: Biophysics</p>
<p>Affiliation: <a href="https://www.mpi-cbg.de/research-groups/current-groups/stephan-grill/research-focus/" target="_blank" rel="noreferrer noopener external" data-wpel-link="external">MPI-CBG</a> | <a href="https://www.csbdresden.de/research/research-groups/" target="_blank" rel="noreferrer noopener external" data-wpel-link="external">CSBD</a> | <a class="extlink https cursor-init" href="https://physics-of-life.tu-dresden.de/en/research/core-groups/adams" target="_blank" rel="noopener external noreferrer" data-wpel-link="external">Physics of Life (TU Dresden)</a></p>
<p>Contact: grill (at) mpi-cbg (dot) de</p>
<p>RTG Project: <a href="https://dresdencondensates.org/projects/a5/" data-wpel-link="internal">A5</a></p>
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														<div class="isotope-wrapper grid-wrapper single-gutter" >												<div class="isotope-container grid-container isotope-layout style-masonry isotope-pagination grid-pagination" data-type="masonry" data-layout="fitRows" data-lg="1000" data-md="600" data-sm="480" data-vp-height="">			<div class="tmb atc-typography-inherit tmb-iso-w4 tmb-iso-h4 tmb-light tmb-overlay-showed tmb-content-left tmb-image-anim tmb-meta-size-large  grid-cat-199 grid-cat-5 grid-cat-56 grid-cat-112 tmb-id-2365 tmb-img-ratio tmb-only-text tmb-content-under tmb-no-bg" ><div class="t-inside no-anim" ><div class="t-entry-text">
									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-199 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/awards/">Awards</a><span class="small-spacer"></span></span><span class="t-entry-category t-entry-category-5 t-entry-tax"><a href="https://dresdencondensates.org/category/simon-alberti-group/" data-wpel-link="internal">Simon Alberti Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-56 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/anthony-hyman-group/">Anthony Hyman Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-112 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/rtg-3120/">RTG 3120</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/jahnel-alberti-and-hyman-among-clarivates-highly-cited-researchers-in-2025/" target="_self" data-wpel-link="internal">Alberti and Hyman among Clarivate&#8217;s Highly Cited Researchers in 2025</a></h3><p>&nbsp;
RTG 3120 PI's have been among the most highly cited authors in 2025, according to Clarivate. The Hyman and Alberti groups lead the way "in the top 1% by citations for their field(s) and publication year in the Web of Science Core Collection"
See the press release by TU Dresden:…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/jahnel-alberti-and-hyman-among-clarivates-highly-cited-researchers-in-2025/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-112 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/rtg-3120/">RTG 3120</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/new-research-training-group-for-biomolecular-condensates-in-dresden/" target="_self" data-wpel-link="internal">New Research Training Group for Biomolecular Condensates in Dresden</a></h3><p>The DFG approved a funding application to establish a new Research Training Group (RTG 3120) in Dresden to train PhD students interdisciplinary methods and approaches to study Biomolecular Condensates. Read the press releases for more:…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/new-research-training-group-for-biomolecular-condensates-in-dresden/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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</div><p>The post <a href="https://dresdencondensates.org/portfolio/stephan-grill-group/" data-wpel-link="internal">Stephan Grill</a> appeared first on <a href="https://dresdencondensates.org" data-wpel-link="internal">RTG 3120 Biomolecular Condensates</a>.</p>
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		<title>Agnes Toth-Petroczy</title>
		<link>https://dresdencondensates.org/portfolio/agnes-toth-petroczy-group/</link>
		
		<dc:creator><![CDATA[Mohamad Almedawar]]></dc:creator>
		<pubDate>Wed, 12 Jan 2022 12:47:13 +0000</pubDate>
				<guid isPermaLink="false">https://dresdencondensates.org/?post_type=portfolio&#038;p=347</guid>

					<description><![CDATA[<p>Protein plasticity and evolution<br /></br></p>
<p>The post <a href="https://dresdencondensates.org/portfolio/agnes-toth-petroczy-group/" data-wpel-link="internal">Agnes Toth-Petroczy</a> appeared first on <a href="https://dresdencondensates.org" data-wpel-link="internal">RTG 3120 Biomolecular Condensates</a>.</p>
]]></description>
										<content:encoded><![CDATA[<div class="wpb-content-wrapper"><div data-parent="true" class="vc_row row-container" id="row-unique-4"><div class="row single-top-padding single-bottom-padding single-h-padding limit-width row-parent"><div class="wpb_row row-inner"><div class="wpb_column pos-top pos-center align_left column_parent col-lg-8 single-internal-gutter"><div class="uncol style-light"  ><div class="uncoltable"><div class="uncell no-block-padding" ><div class="uncont" ><div class="uncode-single-media  text-left"><div class="single-wrapper" style="max-width: 100%;"><div class="tmb tmb-light  tmb-img-ratio tmb-media-first tmb-media-last tmb-content-overlay tmb-no-bg"><div class="t-inside"><div class="t-entry-visual"><div class="t-entry-visual-tc"><div class="uncode-single-media-wrapper"><div class="dummy" style="padding-top: 56.2%;"></div><img decoding="async" class="wp-image-346" src="https://dresdencondensates.org/wp-content/uploads/2022/01/TOTH-PETROCZY-uai-450x253.jpg" width="450" height="253" alt="Portrait from Agnes Toth-Petroczy"></div>
					</div>
				</div></div></div></div><figcaption>© MPI-CBG</figcaption></div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-500" ><span>Expertise</span></h2></div><div class="clear"></div></div><div class="uncode_text_column text-lead" ></p>
<p style="font-weight: 400;">The Toth-Petroczy group comprises an interdisciplinary team of computational biologists, computer scientists, molecular biologists, biochemists and biophysicists. The group aims to understand protein sequence space in the light of evolution and erroneous protein production with focus on intrinsically disordered proteins regions (IDRs).</p>
<p style="font-weight: 400;">The two main research directions in the lab include:</p>
<p style="font-weight: 400;">1) Sequence-to-function paradigm of intrinsically disordered regions and condensate forming proteins.</p>
<p style="font-weight: 400;">2) Phenotypic mutations in evolution and diseases<sup>1</sup>.</p>
<p style="font-weight: 400;">The group uses an interdisciplinary approach by developing novel mechanistic<sup>2,3</sup> and machine learning/deep learning algorithms focusing on evolutionary and/or structural information<sup>4</sup>, and performing experimental validation and high-throughput screenings<sup>5</sup>. Specifically, the group has designed an alignment-free algorithm to assess homology between unalignable IDR sequences (SHARK-dive)<sup>6</sup> and developed a method to identify conserved motifs within a set of homologous IDR sequences (SHARK-capture). The group has developed the CrowDsourcing Condensate Database and Encyclopedia (CD-CODE.org)<sup>7</sup>, that catalogues known condensates and their constituent proteins, and trained a predictor of proteins involved in condensates (PICNIC.cd-code.org) across organisms<sup>8</sup>.</p>
<p>
</div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h3 class="h3 fontheight-185601 font-weight-300" ><span>References:</span></h3></div><div class="clear"></div></div><div class="uncode_text_column" ></p>
<ol>
<li>Romero Romero et al. Phenotypic mutations contribute to protein diversity and shape protein evolution. <em>Protein Sci Publ Protein Soc</em>. 2022;31(9):e4397. <a href="https://doi.org/10.1002/pro.4397" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1002/pro.4397</a></li>
<li>Landerer et al. Fitness Effects of Phenotypic Mutations at Proteome-Scale Reveal Optimality of Translation Machinery. <em>Mol Biol Evol</em>. 2024;41(3):msae048. <a href="https://doi.org/10.1093/molbev/msae048" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1093/molbev/msae048</a></li>
<li style="font-weight: 400;">Landerer et al. deTELpy: Python package for high-throughput detection of amino acid substitutions in mass spectrometry datasets. <em>Bioinforma Oxf Engl</em>. 2024;40(7):btae424. <a href="https://doi.org/10.1093/bioinformatics/btae424" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1093/bioinformatics/btae424</a></li>
<li>
<div><span lang="EN-GB">Luppino et al. DeMAG predicts the effects of variants in clinically actionable genes by integrating structural and evolutionary epistatic features. <i>Nat Commun</i>. 2022;14(1). </span><span lang="EN-US"><a href="https://doi.org/10.1038/s41467-023-37661-z" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1038/s41467-023-37661-z</a></span></div>
</li>
<li style="font-weight: 400;">
<div><span lang="EN-GB">Romero Romero et al. Environment modulates protein heterogeneity through transcriptional and translational stop codon readthrough. <i>Nat Commun</i>. 2024;15(1):4446. </span><span lang="EN-US"><a href="https://doi.org/10.1038/s41467-024-48387-x" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="EN-GB">https://doi.org/</span>10.1038/s41467-024-48387-x</a></span></div>
</li>
<li>Chow et al. SHARK enables sensitive detection of evolutionary homologs and functional analogs in unalignable and disordered sequences. <em>Proc Natl Acad Sci</em>. 2024;121(42):e2401622121. <a href="https://doi.org/10.1073/pnas.2401622121" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1073/pnas.2401622121</a></li>
<li style="font-weight: 400;">
<div><span lang="EN-GB">Rostam et al. CD-CODE: crowdsourcing condensate database and encyclopedia. <i>Nat Methods</i>. 2023;20(5):673-676. </span><span lang="EN-US"><a href="https://doi.org/10.1038/s41592-023-01831-0" data-wpel-link="external" target="_blank" rel="external noopener noreferrer"><span lang="EN-GB">https://doi.org/</span>10.1038/s41592-023-01831-0</a></span></div>
</li>
<li style="font-weight: 400;">
<div>Hadarovich et al. PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms. Published online June 5, 2023. <a href="https://doi.org/10.1101/2023.06.01.543229" data-wpel-link="external" target="_blank" rel="external noopener noreferrer">https://doi.org/10.1101/2023.06.01.543229</a></div>
</li>
</ol>
<p>
</div></div></div></div></div></div><div class="wpb_column pos-top pos-center align_left column_parent col-lg-4 single-internal-gutter"><div class="uncol style-light sticky-element sticky-sidebar"  ><div class="uncoltable"><div class="uncell no-block-padding" ><div class="uncont" ><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h1 class="h1 fontheight-806469 text-uppercase" ><span>Agnes Toth-Petroczy Group</span></h1></div><div class="clear"></div></div><div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-300" ><span>Protein plasticity and evolution</span></h2></div><div class="clear"></div></div><div class="uncode_text_column" ><p>Discipline: Computational Biology</p>
<p>Affiliation: <a href="https://www.mpi-cbg.de/research-groups/current-groups/agnes-toth-petroczy/research-focus/" target="_blank" rel="noreferrer noopener external" data-wpel-link="external">MPI-CBG</a> | <a href="https://www.csbdresden.de/research/research-groups/" target="_blank" rel="noreferrer noopener external" data-wpel-link="external">CSBD</a> | <a class="extlink https cursor-init" href="https://physics-of-life.tu-dresden.de/en/research/core-groups/adams" target="_blank" rel="noopener external noreferrer" data-wpel-link="external">Physics of Life (TU Dresden)</a></p>
<p>Contact: tothpet (at) mpi-cbg (dot) de</p>
<p>RTG Project: <a href="https://dresdencondensates.org/projects/b3/" data-wpel-link="internal">B3</a></p>
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<div class="vc_custom_heading_wrap "><div class="heading-text el-text" ><h2 class="h2 font-weight-500" ><span>Current news by this research group</span></h2></div><div class="clear"></div></div><div id="index-239848" class="isotope-system isotope-general-light grid-general-light" >
			
														<div class="isotope-wrapper grid-wrapper single-gutter" >												<div class="isotope-container grid-container isotope-layout style-masonry isotope-pagination grid-pagination" data-type="masonry" data-layout="fitRows" data-lg="1000" data-md="600" data-sm="480" data-vp-height="">			<div class="tmb atc-typography-inherit tmb-iso-w4 tmb-iso-h4 tmb-light tmb-overlay-showed tmb-content-left tmb-image-anim tmb-meta-size-large  grid-cat-199 grid-cat-5 grid-cat-56 grid-cat-112 tmb-id-2365 tmb-img-ratio tmb-only-text tmb-content-under tmb-no-bg" ><div class="t-inside no-anim" ><div class="t-entry-text">
									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-199 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/awards/">Awards</a><span class="small-spacer"></span></span><span class="t-entry-category t-entry-category-5 t-entry-tax"><a href="https://dresdencondensates.org/category/simon-alberti-group/" data-wpel-link="internal">Simon Alberti Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-56 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/anthony-hyman-group/">Anthony Hyman Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-112 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/rtg-3120/">RTG 3120</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/jahnel-alberti-and-hyman-among-clarivates-highly-cited-researchers-in-2025/" target="_self" data-wpel-link="internal">Alberti and Hyman among Clarivate&#8217;s Highly Cited Researchers in 2025</a></h3><p>&nbsp;
RTG 3120 PI's have been among the most highly cited authors in 2025, according to Clarivate. The Hyman and Alberti groups lead the way "in the top 1% by citations for their field(s) and publication year in the Web of Science Core Collection"
See the press release by TU Dresden:…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/jahnel-alberti-and-hyman-among-clarivates-highly-cited-researchers-in-2025/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-3 t-entry-tax"><a href="https://dresdencondensates.org/category/agnes-toth-petroczy-group/" data-wpel-link="internal">Agnes Toth-Petroczy Group</a><span class="cat-comma">,</span></span><span class="t-entry-category t-entry-category-63 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/funding-and-awards/">Funding and Awards</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/agnes-toth-petroczy-receives-schering-young-investigator-award-2025/" target="_self" data-wpel-link="internal">Agnes Toth-Petroczy receives Schering Young Investigator Award 2025</a></h3><p>According to the Schering Stiftung website: "The Schering Stiftung annually awards the Schering Young Investigator Award, honoring scientists who have demonstrated outstanding achievements in basic research across the spectrum of life sciences... It carries a prize money of € 10,000."
Agnes…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/agnes-toth-petroczy-receives-schering-young-investigator-award-2025/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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									<div class="t-entry-text-tc single-block-padding"><div class="t-entry"><p class="t-entry-meta"><span class="t-entry-category t-entry-category-112 t-entry-tax"><a class="" href="https://dresdencondensates.org/category/rtg-3120/">RTG 3120</a></span></p><div class="spacer spacer-two half-space"></div><h3 class="t-entry-title h3 title-scale "><a href="https://dresdencondensates.org/new-research-training-group-for-biomolecular-condensates-in-dresden/" target="_self" data-wpel-link="internal">New Research Training Group for Biomolecular Condensates in Dresden</a></h3><p>The DFG approved a funding application to establish a new Research Training Group (RTG 3120) in Dresden to train PhD students interdisciplinary methods and approaches to study Biomolecular Condensates. Read the press releases for more:…</p><div class="spacer spacer-one single-space"></div><p class="t-entry-readmore btn-container"><a href="https://dresdencondensates.org/new-research-training-group-for-biomolecular-condensates-in-dresden/" class="btn btn-default " target="_self">Read More</a></p></div></div>
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</div><p>The post <a href="https://dresdencondensates.org/portfolio/agnes-toth-petroczy-group/" data-wpel-link="internal">Agnes Toth-Petroczy</a> appeared first on <a href="https://dresdencondensates.org" data-wpel-link="internal">RTG 3120 Biomolecular Condensates</a>.</p>
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