RTG 3120 Biomolecular Condensates

Seminar Announcement – Patrick McCall

Mohamad Almedawar — Wed, 29 Apr 2026 12:20:14 +0000

Speaker: Patrick McCall, Independent Research Associate, Division of Polymer Biomaterials Science, Max Bergmann Center, Leibniz Institute of Polymer Research Dresden

Title: “Contrasting phases: from biomolecular composition to condensate properties and functionality”

Date: Tuesday, 05 May 2026

Time: 12:00

Room: Left Auditorium, CRTD, Fetscherstrasse 105, 01307 Dresden

Host: Research Training Group Biomolecular Condensates (RTG 3120)

Abstract: Biomolecular condensates are dense phases enriched in specific molecules and their complex composition underlies their physical properties as well as their contribution to essential physiological processes. Reconstitution of minimal model systems from purified components is a powerful tool to handle this complexity but doesn’t provide control of local composition directly, as a condensate’s composition is itself an emergent property governed by a complex mix of entropic effects and molecular interactions. The loss of compositional control upon phase separation is most acute in multicomponent systems, as the local component stoichiometry need not reflect the average specified by an experimenter.

In this talk, I will describe how the composition of multicomponent condensates can be measured using a label-free method we developed recently based on the analysis of tie-lines and refractive index (ATRI). I will show how precise compositional measurements across a range of model systems reveal sequence-encoded variation in physical properties for RNA-binding protein (RBP) condensates, a decoupling transition between local RNA/RBP stoichiometry and density, and how local density can regulate enzymatic reactions in peptide/ribozyme condensates. Finally, I will also discuss how couplings between distinct aspects of composition, from density and stoichiometry to local charge content and pH, provide a useful basis for contrasting condensate microenvironments and potentially for interpreting their functional consequences for regulating biochemistry.

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Alberti and Hyman among Clarivate’s Highly Cited Researchers in 2025

Mohamad Almedawar — Thu, 13 Nov 2025 08:04:48 +0000

RTG 3120 PI’s have been among the most highly cited authors in 2025, according to Clarivate. The Hyman and Alberti groups lead the way “in the top 1% by citations for their field(s) and publication year in the Web of Science Core Collection”

See the press release by TU Dresden: https://tu-dresden.de/tu-dresden/newsportal/news/starkes-zeichen-fuer-die-qualitaet-der-spitzenforschung-13-forschende-der-tud-gehoeren-zu-den-meistzitierten-weltweit?set_language=en

See the full list: https://clarivate.com/highly-cited-researchers/

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Agnes Toth-Petroczy receives Schering Young Investigator Award 2025

Mohamad Almedawar — Thu, 09 Oct 2025 11:11:00 +0000

According to the Schering Stiftung website: “The Schering Stiftung annually awards the Schering Young Investigator Award, honoring scientists who have demonstrated outstanding achievements in basic research across the spectrum of life sciences… It carries a prize money of € 10,000.”

Agnes “receives the award for her pathbreaking work on the evolution, diversity, and function of proteins – especially those that have so far been largely unexplored.”

Agnes is currently recruiting a PhD student for the project: Sequence to function mapping of condensate proteomes (B3) within the RTG Biomolecular Condensates.

Schering Young Investigator Award 2025

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Molecular dynamics investigation of polymer-decorated nanoparticles with co-nonsolvent

Mohamad Almedawar — Thu, 09 Oct 2025 09:42:38 +0000

A new study by Sommer and colleagues in the Journal of Chemical Physics investigates how polymer-decorated nanoparticles (PDNPs)—tiny particles coated with grafted polymer chains—undergo structural changes in mixed-solvent environments. Using detailed molecular dynamics simulations, the authors of the study entitled “Molecular dynamics investigation of polymer-decorated nanoparticles with co-nonsolvent: Structural transitions from isotropic layers to heterogeneous patches” reveal how the co-nonsolvency (CNS) effect—a phenomenon where adding a small amount of a secondary solvent can change overall solvent quality—induces dramatic transformations in PDNP morphology.

In good solvents, the grafted polymers form uniform, isotropic “brush-like” layers around the nanoparticle, completely covering its surface. As CNS concentration increases, the solvent becomes poorer, triggering a first-order phase transition in which these smooth polymer coatings collapse into heterogeneous patchy micelles.	© Copyright 2025 AIP Publishing LLC

This process is reversible: upon further increasing the better solvent’s proportion, the system undergoes a two-step reentry transition—first restoring angular uniformity and then expanding radially. The researchers use a quantitative descriptor, surface coverage (θ), which measures how much of the nanoparticle surface remains shielded by polymer. Tracking θ provides deep insight into these morphological transitions beyond traditional metrics like brush thickness.

A major finding is that PDNPs on curved (spherical) surfaces respond more sensitively and over broader parameter ranges than planar polymer brushes, making them better suited for practical applications. The simulations further demonstrate that these solvent-controlled structural changes can reversibly regulate the adsorption or exclusion of cargo nanoparticles(CNPs) based on size. Small CNPs can penetrate swollen brushes in good solvents, while larger ones adhere only when the polymer collapses into patches, enabling selective, tunable particle screening.

Impact:
This work provides a mechanistic framework for designing stimuli-responsive nanomaterials that can reversibly change surface properties and selectively interact with other particles—all through minimal solvent adjustments rather than temperature or pH changes. The results have promising implications for drug delivery systems, smart coatings, and nanoscale separation technologies, where environmental control and size-selectivity are critical

Citation:

Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer; Molecular dynamics investigation of polymer-decorated nanoparticles with co-nonsolvent: Structural transitions from isotropic layers to heterogeneous patches. J. Chem. Phys. 7 October 2025; 163 (12): 124902. https://doi.org/10.1063/5.0295227

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Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates

Mohamad Almedawar — Wed, 20 Aug 2025 13:15:24 +0000

A new study from the labs of Honigmann, Hyman, and Alberti in Dresden, in addition to colleagues in Texas A&M University, Mayo Clinic, Brown University, and Saint Louis University investigates the mechanism behind pathological outcomes of protein aggregation inside stress granules. The authors of the study entitled “Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates” and published in Cell in May, 2025, determined that aggregation of TAR DNA-binding protein 43 (TDP-43) is induced by two events, namely up-concentration of TDP-43 in stress granules beyond a threshold and oxidative stress and described the mechanism behind the observation. They use this new understanding to engineer TDP-43 variants resistant to aggregation in the cell.

Impact: The aggregation of TDP-43 in motor neurons is a hallmark of neurodegenerative diseases including amyotrophic lateral sclerosis (ALS). Understanding the mechanisms leading to aggregation paves the path towards developing preventive and therapeutic strategies.

Citation:

Yan, X., Kuster, D., Mohanty, P., Nijssen, J., Pombo-García, K., Garcia Morato, J., Rizuan, A., Franzmann, T. M., Sergeeva, A., Ly, A. M., Liu, F., Passos, P. M., George, L., Wang, S.-H., Shenoy, J., Danielson, H. L., Ozguney, B., Honigmann, A., Ayala, Y. M., Fawzi, N. L., Dickson, D. W., Rossoll, W., Mittal, J., Alberti, S., & Hyman, A. A. (2025). Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates. Cell, 188(15), 4123-4140.e4118. https://doi.org/10.1016/j.cell.2025.04.039

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Impact of Coiled-Coil Domains on the Phase Behavior of Biomolecular Condensates

Mohamad Almedawar — Wed, 20 Aug 2025 12:35:44 +0000

A new Study from the Harmon and Sommer Labs in ACS Macro Letters entitled ‘Impact of Coiled-Coil Domains on the Phase Behavior of Biomolecular Condensates’ addressed how the geometry and structure of folded domains impact condensate formation. They used coarse-grained simulations to determine that coiled-coil domains (CCDs) promote liquid–liquid phase separation (LLPS), while replacing the CCD with a flexible linker abolishes LLPS. CCDs must have a critical length to promote LLPS at low concentrations.

The results of this study offer a framework for designing synthetic condensates with tunable phase behaviors.

Citation:

Zhouyi He, Jens-Uwe Sommer, and Tyler S. Harmon. Impact of Coiled-Coil Domains on the Phase Behavior of Biomolecular Condensates. ACS Macro Letters 2025 14 (4), 413-419. DOI: 10.1021/acsmacrolett.4c00821

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New Research Training Group for Biomolecular Condensates in Dresden

Mohamad Almedawar — Wed, 09 Jul 2025 20:18:32 +0000

The DFG approved a funding application to establish a new Research Training Group (RTG 3120) in Dresden to train PhD students interdisciplinary methods and approaches to study Biomolecular Condensates. Read the press releases for more:

https://tu-dresden.de/tu-dresden/newsportal/news/dfg-foerdert-neues-graduiertenkolleg-zur-erforschung-biomolekularer-kondensate-in-dresden
https://www.mpi-cbg.de/news-outreach/news-media/article/new-research-training-group-for-biomolecular-condensates-in-dresden

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Researchers from Dresden and Barcelona reveal how glycolysis drives early embryonic cell decisions

Mohamad Almedawar — Wed, 09 Jul 2025 19:40:41 +0000

The studies, published in CellStemCell with the participation of RTG 3120 PI Miki Ebisuya, uncover the instructive potential of glycolysis. Read the press coverage and publications for more:

https://www.embl.org/news/science-technology/metabolism-shapes-life/
https://www.mpi-cbg.de/news-outreach/news-media/article/metabolism-shapes-life
Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model. Cell Stem Cell, 16 April, 2025. https://doi.org/10.1016/j.stem.2025.03.012
Glycolytic activity instructs germ layer proportions through regulation of Nodal and Wnt signaling, Cell Stem Cell (2025). https://doi.org/10.1016/j.stem.2025.03.011

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A quick intro to the Physics of Wetting

Mariona Esquerda Ciutat — Tue, 19 Sep 2023 12:50:59 +0000

Water forms droplets on the surface of a leaf but it spreads and completely wets the skin of a snail. Why does water behave so differently on the two surfaces? In this video, we introduce the fundamental concepts of surface tension, contact angle and the difference between hydrophobic and hydrophilic materials. Also, we illustrate with examples how the physics of wetting helps understand biological features in cells!

Prepared by Mariona Esquerda Ciutat from the Hyman and Jülicher labs in Dresden.

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How Protein Condensates Age

Mariona Esquerda Ciutat — Tue, 08 Aug 2023 15:02:16 +0000

Protein condensates are dense droplets of proteins that organise the interior of the cell. Curiously, they age, meaning their physical properties such as viscosity change over time. In our paper “Theory of rheology and aging of protein condensates” published in PRX Life, we study how protein condensates become very viscous with time reflecting its glassy nature. We formulate a theory to understand this intriguing phenomenon.

Check out the paper for more info! https://journals.aps.org/prxlife/abstract/10.1103/PRXLife.1.013006

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