Role of condensates in biological time across mammals (B4)

Objective

The goal of of B4 is to characterize the diversity of condensates across animal species and to elucidate how these differences contribute to species-specific kinetics and developmental tempo.

Project Description

Different animal species exhibit distinct biological tempos. For instance, human gestation takes about 9 months, whereas in mice it lasts only around 20 days. The Ebisuya group investigates these species-specific tempos using the “stem cell zoo,” a collection of mammalian stem cell lines, and has demonstrated that cellular environments differ across species. The Hyman group focuses on the physical properties of biomolecular condensates both in vitro and in cells. In collaboration, the groups recently found that the morphology of several condensates involved in gene expression processes differs between species. A key open question is whether such species-specific condensate properties influence biochemical reaction kinetics and thereby contribute to differences in biological tempo. Project B4 aims to address this fundamental question by systematically measuring the kinetics of condensates and associated cellular processes.

B4 - Manipulation of condensates and kinetics

Research questions

  1. How do the kinetics and morphology of condensates vary across species?
  2. What are the underlying mechanisms that give rise to these species-specific condensate properties?
  3. Do such differential condensate properties contribute to species-specific cellular kinetics and biological tempo?

Project Topic

Quantitative characterization of condensates and gene expression kinetics across species

Training

The student and postdoctoral researcher will receive training in cell and stem cell biology, advanced imaging and image analysis, as well as biophysical and biochemical approaches.

Profile of Prospective Student and Postdoc Candidates

  • Student candidates should hold a Master’s degree in biology, physics, or a related field. Candidates are expected to have hands-on experience with laboratory experiments; prior experience with cell cultures and/or imaging is a plus.
  • Postdoc candidates should hold a PhD degree in physics, biology, engineering, or a related field. Candidates should have a strong background in quantitative imaging and analysis; prior experience with single-molecule imaging and/or theoretical aspects of condensate dynamics is highly desirable. In addition, the postdoc candidates are expected to actively collaborate with and provide support to students in the RTG group.

Join Us!

We are currently recruiting the first cohort of motivated doctoral candidates to join our research training group “RTG 3120 Biomolecular Condensates”. If you are a potential applicant, register and complete the following form . If you have questions about the research topic, then email the project supervisor >

Explore other RTG Thesis Projects

Collaborations within the RTG

Click on the different project numbers (e.g. A1) to find out more about the theme of their ongoing collaborations and explore the project details

Collaborations within the RTG
A2 - Biomolecular condensate regulation (Harmon) A4 - Theory and simulation of polymer-assisted condensates (Sommer) B2 - Characterizing the role of RNP granules in ALS (Sterneckert) A1 - Role of surface condensation for the assembly of cortical proteins (Honigmann) A3 - Spectroscopy and local interactions in condensates and organization of the cytoplasm (Adams) A5 - Capillary forces and the force response of condensates (Jahnel and Grill) B1 - Elucidating the mechanisms underlying mRNA translation regulation by condensation (biophysics and biochemistry) (Alberti and Schlierf) B3 - Sequence to function mapping of condensate proteomes (Toth-Petroczy) B4 - Role of condensates in biological time across mammals (Ebisuya and Hyman) B5 - Role of condensates in epigenetics (experiments and theory) (Brugués and Schiessel)

A2 - Biomolecular condensate regulation (Harmon)

Project A2 Collaborations

A4 - Theory and simulation of polymer-assisted condensates (Sommer)

Project A4 Collaborations

B2 - Characterizing the role of RNP granules in ALS (Sterneckert)

Project B2 Collaborations

A1 - Role of surface condensation for the assembly of cortical proteins (Honigmann)

Project A1 Collaborations

A3 - Spectroscopy and local interactions in condensates and organization of the cytoplasm (Adams)

Project A3 Collaborations

A5 - Capillary forces and the force response of condensates (Jahnel and Grill)

Project A5 Collaborations

B1 - Elucidating the mechanisms underlying mRNA translation regulation by condensation (biophysics and biochemistry) (Alberti and Schlierf)

Project B1 Collaborations

B3 - Sequence to function mapping of condensate proteomes (Toth-Petroczy)

Project B3 Collaborations

B4 - Role of condensates in biological time across mammals (Ebisuya and Hyman)

Project B4 Collaborations

B5 - Role of condensates in epigenetics (experiments and theory) (Brugués and Schiessel)

Project B5 Collaborations